Healthy lemon poppy seed muffins, made with coconut flour, are a delicious recipe and perfect for springtime. These gluten-free muffins are naturally sweetened and have the perfect amount of lemon flavor. Topped with whipped cream and crunchy, toasted, shredded coconut, everyone will absolutely love them.
three muffins topped with frosting, lemon zest and toasted coconut on a antique plate

This is the perfect recipe for spring. These muffins are really delicious, as well as kid-tested and approved.

That said, my kids have never turned down a muffin topped with whipped cream.

Today, so many people have some sort of food sensitivity, and it seems as though gluten sensitivity is one of the most prevalent.

You may know my love forย sourdough, but some people are so sensitive to gluten that they cannot tolerate even long-fermented sourdough products.

Enter gluten-free coconut flour muffins.

They have a wonderfully light and fluffy texture, the perfect amount of sweetness and lemon flavor, and they are topped with a whipped cream lemon frosting. I’m not done. Finally, I sprinkle on some toasted coconut sweetened with maple syrup.

Not only do these make a tasty dessert, but theyโ€™re also a good breakfast recipe. These kids don’t know how lucky they are. Muffins with whipped cream for breakfast? How wonderful!

And since they are packed with fiber, they help us stay full all morning long.

lemon poppy seed muffins with whipped cream, lemon zest and toasted coconut.

How healthy is coconut flour?

Coconut flour actually offers many health benefits, making it a great option. It is a good source of fiber (a whopping 10 grams per 1/4 cup), iron, healthy fats, and has a lower glycemic index.

It may also help stabilize blood sugar, help aid in digestion, and may improve heart health due to the lauric acid content and possible ability to lower blood cholesterol levels. (source)

a muffin with frosting cut in half on antique plate

Tips For Making Coconut Flour Muffins:

  • Coconut flour can be tricky to work with and different brands may give you different results. I used Bob’s Redmill for this recipe.
  • I like using room temperature eggs so that when I add the coconut oil, it doesn’t solidify. This is totally optional, but improves the texture.
  • This recipe calls for coconut milk, but you could substitute regular milk or even water.
  • Pipe the frosting using a ziplock bag with the corner cut off. To reduce waste, I usually clean out the bag and keep it to use just for frosting.
  • Make sure the muffins are completely cooled before frosting them, otherwise the whipped cream will just melt.

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Tools you may need:

Stainless steel muffin tin

Large bowl

Spoon

Measuring cups and spoons

Microplane

Stand mixer or hand mixer

Juicer

Cast iron skillet

overhead shot of muffins with lemon whipped cream frosting topped with lemon zest.

How To Make Lemon Poppy Seed Coconut Flourย Muffins

Step One: Make The Muffin Batter

  1. Preheat oven to 350.
  2. Place cupcake liners in the muffin tin. You could also just grease the tin with coconut oil.
  3. In a large bowl, add in all the ingredients except the poppy seeds.lemon poppyseed muffin batter in a stainless steel bowl. Egg shells to the left.
  4. Stir well. You will notice how the coconut flour really absorbs the liquid.
  5. Add in poppy seeds and fold them in.
  6. Add batter to the muffin tins, filling about 3/4 of the way.pouring muffin batter into lined muffin tins
  7. Bake for 25 minutes or until a toothpick comes out clean and the sides are starting to turn golden in color.
  8. Allow to completely cool before adding frosting.

Step 2: Toast The Coconut

  1. Place in a cast iron skillet (or another type of skillet) over medium heat, stirring constantly so it doesn’t burn.
  2. After the shredded coconut is turning golden, add honey and stir. Turn off heat and allow to cool. honey in a mason jar being poured onto toasted coconut flakes in a cast iron skillet

Step 3: Make Lemon Whipped Cream Frosting

  1. Add whipped cream to a stand mixer with the whisk attachment. Add lemon juice and whisk over medium high speed.
  2. Once the cream has started to thicken, add the maple syrup. Whip until stiff peaks form.
  3. Once the lemon poppy seed muffins have totally cooled, pipe the lemon frosting onto the muffins, then top with lemon zest and toasted coconut. women pipping lemon whipped cream over muffins

More delicious recipes straight from our farmhouse kitchen:

If you try this recipe and love it, I would love if you could come back and give it 5 stars! Tag me @farmhouseonboone on Instagram if you make it.

Lemon Poppy Seed Muffins With Coconut Flour

4.80 from 15 votes
Delicious and healthy lemon poppy seed muffins with coconut flour.
Prep: 10 minutes
Cook: 25 minutes
Additional Time: 20 minutes
Total: 55 minutes
Servings: 12 muffins
coconut flour lemon poppy seed muffins topped with whipped cream, toasted coconut and pink flowers
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Ingredients 

Lemon Poppy Seed Muffins

  • 3/4 cup coconut flour
  • 6 eggs
  • 1/4 cup coconut milk, could also use reg. milk
  • Juice from 2 lemons, reserve 2 tbsp of juice for icing and some zest for topping/garnish
  • Zest of 1 lemon
  • 1/4 cup coconut oil, melted
  • 1/4 teaspoon salt
  • 3/4 cup coconut sugar
  • 1 teaspoon baking soda
  • 1/2 teaspoon baking powder
  • 1 teaspoon vanilla
  • 1/2 tablespoon poppy seeds

Icing:

  • 1 cup cream
  • 1 tablespoon lemon juice
  • 4 tablespoons raw honey or maple syrup

Topping:

  • 1/2 cup shredded coconut
  • 1 tablespoon honey

Instructions 

  • Preheat oven to 350.
  • Place cupcake liners in the muffin tin.
  • In a large bowl, add in all the ingredients except the poppy seeds. Stir well.
  • Add in poppy seeds and fold in.
  • Add batter to the muffin tins ,filling about 3/4 of the way.
  • Bake for 25 minutes or until the a toothpick comes out clean and the sides are starting to turn golden in color.
  • Add whipping cream to a stand mixer with the whisk attachment, add lemon juice and whisk over medium high speed. Once the cream has started to thicken, add the maple syrup. Whip to stiff peaks.
  • Place shredded coconut in a cast iron skillet (or another type of skillet) over medium heat, stirring constantly so it doesn't burn.
  • Once the coconut has started turning brown, add honey and stir. Turn off heat and allow to cool.
  • After the muffins have completely cooled, pipe the frosting onto muffins, then top with lemon zest and toasted coconut.

Notes

  • I like using room temperature eggs so that when I add the coconut oil, it doesn't solidify. It is totally optional.
  • You can substitute a different type of milk or water for the coconut milk in this recipe.
  • Make sure the muffins are completely cooled before frosting them. If they are too warm, the whipped cream will just melt.

Nutrition

Serving: 1muffin | Calories: 259kcal | Carbohydrates: 23g | Protein: 5g | Fat: 17g | Saturated Fat: 12g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 3g | Trans Fat: 0.01g | Cholesterol: 104mg | Sodium: 240mg | Potassium: 81mg | Fiber: 3g | Sugar: 17g | Vitamin A: 410IU | Vitamin C: 1mg | Calcium: 43mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

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lemon poppy seed muffins topped with whipped cream, lemon zest and toasted coconut

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4.80 from 15 votes (15 ratings without comment)

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3 Comments

  1. Lindsay Cotter says:

    These lemon poppyseed muffins are heavenly!! They are the perfect treat to enjoy!